Open justinrporter opened 5 years ago
Hi, is this issue still up? I understand the problem is in this file. I see some warnings related to file extensions already there though.
Yes, I think so. There are two related things going on here:
--trajectories
instead of --features
(they are mutually exclusive), there are two types of files you can get for the output of --center-features
. One is an h5
, and this is if you pass --topology
and --trajectories
only once and the other is a pickle, and that's if you pass them more than once.
cluster.py, if you pass a path with a weird file extension for --center-features, doesn't warn you. For example, if you're doing rmsd clustering, and you give
xxx.npy
, it will save that, even if it's a pickle.