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bowmanjeffs / paprica

paprica - PAthway PRediction by phylogenetIC plAcement
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tally_pathways naming #26

Closed bowmanjeffs closed 8 years ago

bowmanjeffs commented 8 years ago

Currently paprica_tally_pathways uses the segment of the input csv name before the first period as the name for the output. This fails if there are periods in the query name. Should add -i and -o flags to this command so that the user can specify the input csv and output name.