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bowmanjeffs / paprica

paprica - PAthway PRediction by phylogenetIC plAcement
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duplicate unique reads #81

Closed bowmanjeffs closed 3 years ago

bowmanjeffs commented 3 years ago

Some unique reads place to different edges in different runs. When the runs are aggregated this results in spurious unique reads. combine_results should combine spurious unique reads.

bowmanjeffs commented 3 years ago

This is fixed in combine_results. The unique_tally file is now indexed by sequence. Sequences that place to multiple edges can be identified in the seq_edge_map.csv file (they are listed first).