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boxiangliu / locuscomparer

LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
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Error in function get_lead_snp - in_fn1, in_fn2 are not in scope #7

Closed Jeremy37 closed 5 years ago

Jeremy37 commented 5 years ago

I got the following error: "ERROR: Error in sprintf(\"%s not found in the intersection of %s and %s\", snp, : object 'in_fn1' not found\n"

I traced this to the function get_lead_snp, where objects in_fn1 and in_fn2 are used, but are not in scope since they aren't passed in to the function.

boxiangliu commented 5 years ago

This error happens when there is no overlap between input files 1 and 2, or because the specified SNP is not in the intersection of these two files.

Also, thanks for the bug report. It has been fixed.