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brain-bican / human_brain_atlas_ontology

An application ontology built by combining ontologised versions of the Allen Institute Human Brain Atlas (HBA) StructureGraph mapped to Uberon.
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Move UBERON-HBA bridge files to HBAO repository #3

Open hkir-dev opened 2 months ago

hkir-dev commented 2 months ago

Create SSOM mapping files in the HBAO repository that will replace the uberon-bridge-to-hba.owl

This command can be used to generate SSSOM mapping from the uberon-edit.obo https://incenp.org/dvlpt/sssom-java/robot-xref-extract.html (check --ignore-treat-xrefs parameter to only generate HBA mappings)

Sample file exists in FBBT: https://github.com/FlyBase/drosophila-anatomy-developmental-ontology/blob/master/fbbt.sssom.tsv This is the required example rule file: https://github.com/FlyBase/drosophila-anatomy-developmental-ontology/blob/master/src/scripts/bridging.rules (ignore annotate_subject(IAO:0000589, "%object_label (Drosophila)"); section)

This example GitHub actions can be used for continuous integration: https://github.com/FlyBase/drosophila-anatomy-developmental-ontology/blob/master/.github/workflows/uberon-integration.yml