New Metadata Schema Request: Developing human, NHP, tissue metadata - Githubissues

brain-bican / metadata-schemas

A repository for BICAN metadata schemas and their development.

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New Metadata Schema Request: Developing human, NHP, tissue metadata #47

Closed patrick-lloyd-ray closed 2 weeks ago

patrick-lloyd-ray commented 2 months ago

Contact Details

patrick.ray@alleninstitute.org

Schema Name

Developing human, NHP, and tissue metadata

Oranizational Usage

BICAN, HMBA

General Description

This is a metadata schema that describes the data for developing human, developing non-human primate, and general tissue metadata for developing life cycle stages. Dev NHP.xlsx Dev Human.xlsx Dev Tissue.xlsx

Suggested Reviewers

@licongcui @MariahKenney @patrick-lloyd-ray

What format are you submitting your schema in?

.xlsx or .csv or .tsv

Completed README

[x] I have completed a README for this schema.

patrick-lloyd-ray commented 1 month ago

For Human:

[x] align names and labels
[x] check for existing fields
[x] assign UUIDs to existing fields
[x] assign UUIDs to new fields
[x] add version
[x] add date
[x] complete data_type
[x] complete is_required column
[ ] add permissible values
[x] update README

patrick-lloyd-ray commented 1 month ago

For NHP:

[x] align names and labels
[x] check for existing fields
[x] assign UUIDs to existing fields
[x] assign UUIDs to new fields
[x] add version
[x] add date
[x] complete data_type
[x] complete is_required column
[ ] add permissible values
[x] update README

patrick-lloyd-ray commented 1 month ago

For Dev Tissue:

[x] align names and labels
[x] check for existing fields
[x] assign UUIDs to existing fields
[x] assign UUIDs to new fields
[x] add version
[x] add date
[x] complete data_type
[x] complete is_required column
[ ] add permissible values
[x] update README

patrick-lloyd-ray commented 1 month ago

@licongcui @MariahKenney

Would you be able to take a look this week so that we can discuss at the WG meeting next week?

patrick-lloyd-ray commented 1 month ago

I added definitions to the terms in these sheets. I will also complete the remaining tasks (save the README for after WG approval). Are there any objections here? @licongcui @MariahKenney

patrick-lloyd-ray commented 1 month ago

We will discuss this in the WG tomorrow. The permissible values will need discussion with the larger group.

patrick-lloyd-ray commented 3 weeks ago

Awaiting feedback on the definitions from WG. However, @licongcui and @MariahKenney it is ready for a final look from you. I will try to merge this soon.

@puja-trivedi and @djarecka would you like to make sure the model generator works as expected for these tables?

djarecka commented 3 weeks ago

@puja-trivedi and @djarecka would you like to make sure the model generator works as expected for these tables?

yes, we will check it early enxt week

patrick-lloyd-ray commented 3 weeks ago

@puja-trivedi and @djarecka would you like to make sure the model generator works as expected for these tables?

yes, we will check it early enxt week

Fantastic! Thank you!

djarecka commented 3 weeks ago

@patrick-lloyd-ray - I've created the google sheet that I used to create a first version of the model: https://docs.google.com/spreadsheets/d/1UCkvjIDlgfr7i_6WkI8t7ktLC-p3McGD4tYmSy2snSI/edit?usp=sharing

I had to add a couple of things to automatically convert types (e.g., from test to string), but the most important thing is that I need information about the classes and permissable values