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brain-bican / models

BICAN data models
https://brain-bican.github.io/models/
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[WIP] Assertion evidence model #78

Closed puja-trivedi closed 1 week ago

puja-trivedi commented 1 month ago

Google Sheet: https://docs.google.com/spreadsheets/d/1UpjNNJz9o1TXpPS245tbPsVbIx_p5_m2f54KoIwGF8g/edit?gid=1224768617#gid=1224768617

tekrajchhetri commented 1 month ago

@puja-trivedi when I try generating the image, I was getting issue range not recognized for dateTime. I fixed it using the following snippet. Updating prefix xsd: http://www.w3.org/2001/XMLSchema#

Adding types

  dateTime:
    base: string
    uri: xsd:dateTime

Also the range eco:assertion method in has_assertion_method is not recognized. For now in my local copy I've used the class AssertionMethod that is already defined.

Other than that I observe disconnection, i.e., not all concepts are linked.

Assertion-evidence-schema

Updating Used gen-yuml tool.

gen-yuml -f png -d . assertion_evidence.yaml

tekrajchhetri commented 2 weeks ago

Updating in response to feedback from the LinkML community on Slack.

The gen-yuml tool seems to be deprecated. So we can ignore the issue.

Current supported diagram generators are:

Additional information: https://docs.google.com/presentation/d/1NEQX39Q3qemUO6h46Gy9Peiyf8vewx_9g-OfCUQe0fU/edit?usp=sharing

Closing the issue.

djarecka commented 2 weeks ago

we use Mermaid and ER