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brain-life / o3d-code

Open Derivatives Diffusion Data scripts used to generate and organize the data
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Masking HCP7T recon_model images #15

Closed Paolopost closed 8 years ago

Paolopost commented 8 years ago

The images of HCP7T in 'recon_model' pipeline folder should be masked: sub-{108323, 109123, 131217, 910241}_b-2000_dwi.bvec sub-{108323, 109123, 131217, 910241}_b-2000_dwi_FA.nii.gz sub-{108323, 109123, 131217, 910241}_b-2000_dwi_DTI.nii.gz sub-{108323, 109123, 131217, 910241}_b-2000_dwi_ODF.nii.gz

The command line to apply the mask is the following fslmaths -mas

The masks for each subject are here DIR: /N/dc2/projects/lifebid/HCP7/ FILES: {108323, 109123, 131217, 910241}/diffusion_data/nodif_brain_mask.nii.gz