brain-life / workflow_ui

Workflow UI prototype for Brain-Life
http://brain-life.org
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Data processing has stopped #9

Open garikoitz opened 6 years ago

garikoitz commented 6 years ago

Hi! congratulations for this great project!

I was testing some of the pipelines, such as LiFE, Streamline Tracking, O3D and White Matter Tracking, and I realized that after several days all of them are stuck in some part of the process. Well, 3 are stuck in the FS phase and one is in the tracking step.

All of the processes were fed with the same data I downloaded from your HCP 3T database 101915_dwi.bvec 101915_dwi_corrected.bval 101915_dwi.nii.gz t1.nii.gz

What should I do know? Are there any steps I should take to check, reboot, evaluate the situation? Why do you think this happened?

Thanks again for this project and best regards, Gari

soichih commented 6 years ago

Gari,

Thank you for trying our workflows!

I've noticed one of your job still in a failed status (brain-life/app-life), so I have restarted it to see what happens. So far it's been running OK. Once it finishes, you should be able to view some basic evaluation statistics and download the fe object.

I couldn't find any other tasks that are currently in failed status. When you say "FS phase", do you mean Freesurfer? I see most of your Freesurfer tasks have finished successfully (1 is removed). Perhaps you have already removed the task / workflows that are failed? Can you reach us via the slack (I've sent you an invite to brainlife.slack.com) to discuss your problem further?

I am looking forward to hearing from you!

Soichi