Consider evaluating inverse alongside forward transform: When we do pairwise_evaluation_ants with source image A and target image B, we will probably also be interested in the outcome with A and B swapped. We can do this by running pairwise_evaluation_ants again with the two swapped, but ConstrICON will give the inverse for free. So pairwise_evaluation_ants could just do both the (A,B) and (B,A) cases at once. It may not save time for the ANTS evaluation but it can save time later.
Determine which subset of fiber tracts to run things on
Test carefully and verify by hand that everything is working correctly before we run this thing in #5
pairwise_evaluation_antswith source image A and target image B, we will probably also be interested in the outcome with A and B swapped. We can do this by runningpairwise_evaluation_antsagain with the two swapped, but ConstrICON will give the inverse for free. Sopairwise_evaluation_antscould just do both the (A,B) and (B,A) cases at once. It may not save time for the ANTS evaluation but it can save time later.