dyneusr-fire - Githubissues

braindynamicslab / dyneusr

Dynamical Neuroimaging Spatiotemporal Representations (DyNeuSR)

https://braindynamicslab.github.io/dyneusr

BSD 3-Clause Clear License

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dyneusr-fire #3

Open calebgeniesse opened 5 years ago

calebgeniesse commented 5 years ago

Adding dyneusr-fire command-line executable. This script wraps kmapper graph generation and dyneusr visualization into a single executable and uses the python-fire module to allow users to specify important options at the command line. For now, only certain options are recognized, but more can be added down the line.

Note, this branch was originally intended for exploring docker, but I found this solution to be much simpler and optimal at this point.

TODO:

[x] add dyneusr-fire script
[x] add dyneusr-fire examples
[x] update setup.py to install dyneusr-fire during setup
[ ] document dyneusr-fire, options, and usage (README.md + docs/index.md)
[ ] deploy to pypi

calebgeniesse commented 5 years ago

I decided to make a separate repository for dyneusr-fire, see: https://github.com/braindynamicslab/dyneusr-fire