Hey @Dishie2498, please find below some improvements for the v3 of the doc :

1. Bug fixing

[x] Add the line autosummary_generate = True in the conf.py like here
[x] References are not listed because none are used in the code. You need to add a References section for the OinfoZeroLag and InfoTopo and cite the refences like here

2. Improvements

[x] The documentation of classes and functions generated using autosummary should follow those templates
[x] Can you create a banner that goes at the bottom of each page of the documentation? The banner should contains the logo of the INT, Aix-Marseille university and gsoc
[x] In the Overview tab, can you create a file called ovw_theory.rst with the title Theoretical background. Later, @Mattehub will write some of the mathematical background about information-theory and HOI. You'll also have to create a overview/index.rst file