brainglobe / brainglobe-heatmap

Rendering anatomical heatmaps with brainrender and matplotlib
https://brainglobe.info
MIT License
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Slice cell density map #13

Closed JinyunWuu closed 1 year ago

JinyunWuu commented 1 year ago

Hi,

I have a naive question.

I wonder if I can generate a cell density map using brainrender's function scene.add(PointsDensity()), and then use slicer() to generate a 2D image containing the cell density map at a specific focal plane?

In the end, I want to generate a video showing how the cell density changes across the AP axis. (I am thinking that showing a bunch of focal planes in sequence would work.)

Thank you in advance and look forward to your reply!