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brainglobe
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brainglobe-template-builder
Build unbiased anatomical templates from individual images
https://brainglobe.github.io/brainglobe-template-builder
BSD 3-Clause "New" or "Revised" License
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Added script for sourcing SWC rat images
#46
niksirbi
opened
1 week ago
0
Added plots module with orthographic and grid plots
#45
niksirbi
closed
5 days ago
0
Fix license link in README
#44
niksirbi
closed
2 weeks ago
0
Reorganise scripts in `examples` folders
#43
niksirbi
closed
2 weeks ago
1
Release package on PyPI
#42
niksirbi
opened
3 weeks ago
0
[pre-commit.ci] pre-commit autoupdate
#41
pre-commit-ci[bot]
closed
3 weeks ago
0
make general convenience function for read-downsample-write
#40
alessandrofelder
closed
1 month ago
0
Schedule tests to run weekly
#39
IgorTatarnikov
closed
1 month ago
0
[pre-commit.ci] pre-commit autoupdate
#38
pre-commit-ci[bot]
closed
1 month ago
0
[Feature] Generalise template building further
#37
alessandrofelder
opened
2 months ago
2
WIP: adapted prep highres script for tadpoles
#36
niksirbi
closed
2 weeks ago
1
[Feature] generalise downsampling script further, so it works on other species than tadpole
#35
alessandrofelder
opened
2 months ago
0
Strategies for dealing with difficult rigid registration
#34
alessandrofelder
closed
2 months ago
1
prepare low-res tadpole images for template generation
#33
niksirbi
closed
2 days ago
1
implement a cropping+padding utility function
#32
alessandrofelder
closed
2 months ago
0
Handle array data types prior to saving to nifti
#31
niksirbi
closed
2 months ago
1
Constrain estimation of midplane points within mask extents
#30
niksirbi
closed
2 months ago
0
[Feature] Better test coverage
#29
alessandrofelder
opened
2 months ago
0
Fix transform bug
#28
alessandrofelder
closed
2 months ago
0
[Feature] Add visual feedback for lenghty computations
#27
niksirbi
opened
2 months ago
0
Downsampling script for tadpoles
#26
alessandrofelder
closed
2 months ago
1
depend on latest brainglobe-utils
#25
alessandrofelder
closed
2 months ago
0
[BUG] napari widget align transform need some kind of centering?
#24
alessandrofelder
closed
2 months ago
3
develop off `main`
#23
alessandrofelder
closed
2 months ago
0
Update supported Python versions
#22
alessandrofelder
closed
2 months ago
0
implement dask-downsampling
#21
alessandrofelder
closed
2 months ago
1
[pre-commit.ci] pre-commit autoupdate
#20
pre-commit-ci[bot]
closed
2 months ago
0
Add a standardised contact section to the readme
#19
adamltyson
closed
3 months ago
0
[pre-commit.ci] pre-commit autoupdate
#18
pre-commit-ci[bot]
closed
4 months ago
0
[Feature] Utilities for downsampling images
#17
niksirbi
opened
6 months ago
3
run CI on both types of Mac
#16
alessandrofelder
closed
6 months ago
0
Look into cuttlebase 3D MRI brain template generation
#15
niksirbi
opened
7 months ago
0
[BUG] Depend on brainglobe-utils >= 0.4
#14
niksirbi
closed
2 months ago
0
reuse pypi upload action
#13
niksirbi
closed
9 months ago
1
pin specific patch version for pypi upload action
#12
niksirbi
closed
9 months ago
1
Use latest minor version of pypi upload action
#11
niksirbi
closed
9 months ago
2
Update actions/download-artifact to v4
#10
niksirbi
closed
9 months ago
1
Port napari widgets from magicgui to qt
#9
niksirbi
closed
9 months ago
1
Update collapsible widget API to be compatible with latest brainglobe-utils
#8
niksirbi
closed
9 months ago
1
Install via conda environment file
#7
niksirbi
closed
1 year ago
5
Mention that ANTs cannot be installed on Windows out of the box
#6
niksirbi
opened
1 year ago
0
Fix typo in pip install
#5
niksirbi
closed
1 year ago
1
Compute brain mask for input images
#4
niksirbi
opened
1 year ago
0
Ability to split the two hemispheres
#3
niksirbi
opened
1 year ago
1
Vendor optimized_antsMultivariateTemplateConstruction
#2
niksirbi
opened
1 year ago
0
Add correct twine API key
#1
niksirbi
closed
1 year ago
1