Closed K-Meech closed 5 months ago
I'm looking into writing tests for the summarise_points_by_atlas_region
function. This requires a corresponding BrainGlobeAtlas
object, but I'm not sure which one corresponds to the test volume.csv
file.
Any ideas? @alessandrofelder
My guess is that's it's an Allen one (I know it's definitely a mouse thanks to @niksirbi ) - I would try using BrainGlobeAtlas("allen_mouse_100um")
in the tests (because it's the lowest res one) and see how far you get?
@adamltyson may know more exactly how this data was generated?
I assume it's allen_mouse_something
. No idea which, but to some level of precision, it shouldn't matter. The volumes are in mm^3 and that's the same across all resolutions.
More tests need to be added for the
brainmapper
sub-module - aiming at >90% coverage.