Closed adamltyson closed 10 months ago
Currently brainmapper
is the best name we can come up with. Rather than long, descriptive CLI names, we're thinking of coming up with the best snappy name we can for each one and make sure the docs are clear what they do
This has now been completed. The tool is called brainmapper
, but otherwise nothing else has changed.
To complete the naming simplification, what is currently the cellfinder cli tool (i.e. cellfinder & brainreg) should be renamed. This may also be good time to decide on how the cli tools should be used. I was thinking we could move towards a general
brainglobe
cli, perhaps defined in the metapackage, e.g.:brainglobe atlas_install allen_mouse_10um
brainglobe wholebrain input_data output_dir
Alternatively, we could just rename the current cli to something like
brainglobe_wholebrain_cell
and deprecate the currentcellfinder
cli.