brainglobe / brainglobe-workflows

Workflows that utilise BrainGlobe tools to perform data analysis and visualisation.
BSD 3-Clause "New" or "Revised" License
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Rename cellfinder CLI #60

Closed adamltyson closed 10 months ago

adamltyson commented 11 months ago

To complete the naming simplification, what is currently the cellfinder cli tool (i.e. cellfinder & brainreg) should be renamed. This may also be good time to decide on how the cli tools should be used. I was thinking we could move towards a general brainglobe cli, perhaps defined in the metapackage, e.g.:

Alternatively, we could just rename the current cli to something like brainglobe_wholebrain_cell and deprecate the current cellfinder cli.

adamltyson commented 11 months ago

Currently brainmapper is the best name we can come up with. Rather than long, descriptive CLI names, we're thinking of coming up with the best snappy name we can for each one and make sure the docs are clear what they do

adamltyson commented 10 months ago

This has now been completed. The tool is called brainmapper, but otherwise nothing else has changed.