The idea of this repo is that the workflows are simple pipelines that stitch together existing BG tools. brainmapper has some extra functionality such as transforming detected cells to raw data space and generating heatmaps. These should be moved into brainglobe-utils to:
Simplify maintenance of this repo
Allow the code to be reused (we likely need lots of this in a napari plugin at some point)
Allow users to more easily use the functions in their own scripts
adamltyson
commented
5 months ago
The idea of this repo is that the workflows are simple pipelines that stitch together existing BG tools.
brainmapperhas some extra functionality such as transforming detected cells to raw data space and generating heatmaps. These should be moved intobrainglobe-utilsto: