The text below was removed from the brainglobe-segmentation tutorials, but may be handy as an example for brainrender or brainrender-napari one day:
if you loaded your data in atlas space, you can also export the track to brainrender. The file will be saved as e.g. track_0.npy. Using the Python API, you can visualise the track as follows:
from brainrender import Scene
from brainrender.actors import Points
from myterial import blue
file = ("/path/to/track_0.npy")
scene = Scene()
scene.add(Points(file, colors=blue, radius=100, alpha=0.7))
scene.render()
The text below was removed from the
brainglobe-segmentation
tutorials, but may be handy as an example forbrainrender
orbrainrender-napari
one day: