Closed adamltyson closed 9 months ago
When I first try to run python streamlines.py I get a warning about allensdk (https://github.com/brainglobe/brainrender/issues/288). When this is installed and I try again I get:
python streamlines.py
(brainrender-test) tigger:examples adamtyson$ python streamlines.py Running example: streamlines.py downloading ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 0% -:--:-- ╭─────────────────────────────── Traceback (most recent call last) ────────────────────────────────╮ │ /Users/adamtyson/projects/brainglobe/brainrender/examples/streamlines.py:19 in <module> │ │ │ │ 16 scene.add_brain_region("TH") │ │ 17 │ │ 18 # Get stramlines data and add │ │ ❱ 19 streams = get_streamlines_for_region("TH")[:2] │ │ 20 scene.add(*make_streamlines(*streams, color="salmon", alpha=0.5)) │ │ 21 │ │ 22 # Render! │ │ │ │ /Users/adamtyson/projects/brainglobe/brainrender/brainrender/atlas_specific/allen_brain_atlas/st │ │ reamlines.py:109 in get_streamlines_for_region │ │ │ │ 106 │ │ logger.debug("No experiments found from allen data") │ │ 107 │ │ return None │ │ 108 │ │ │ ❱ 109 │ return get_streamlines_data( │ │ 110 │ │ region_experiments.id.values, force_download=force_download │ │ 111 │ ) │ │ 112 │ │ │ │ /Users/adamtyson/projects/brainglobe/brainrender/brainrender/atlas_specific/allen_brain_atlas/st │ │ reamlines.py:70 in get_streamlines_data │ │ │ │ 67 │ │ jsonpath = streamlines_folder / f"{eid}.json" │ │ 68 │ │ │ │ 69 │ │ if not jsonpath.exists() or force_download: │ │ ❱ 70 │ │ │ response = request(url) │ │ 71 │ │ │ │ │ 72 │ │ │ # Write the response content as a temporary compressed file │ │ 73 │ │ │ temp_path = streamlines_folder / "temp.gz" │ │ │ │ /Users/adamtyson/projects/brainglobe/brainrender/brainrender/_io.py:57 in request │ │ │ │ 54 │ │ exception_string = "URL request failed: {}".format( │ │ 55 │ │ │ response.reason │ │ 56 │ │ ) # pragma: no cover │ │ ❱ 57 │ raise ValueError(exception_string) │ │ 58 │ │ 59 │ │ 60 def check_file_exists(func): # pragma: no cover │ ╰──────────────────────────────────────────────────────────────────────────────────────────────────╯ ValueError: URL request failed: Forbidden
M1 macbook, Python 3.11. Fresh conda env.
Closing as duplicate of #266 .
When I first try to run
python streamlines.py
I get a warning about allensdk (https://github.com/brainglobe/brainrender/issues/288). When this is installed and I try again I get:M1 macbook, Python 3.11. Fresh conda env.