440 adds some parameters to cellfinder image processing in Python. We've discussed on zulip how/which we'd like to expose these in the API (CLI and napari).
The plan is to
do not expose use_scipy and set it always to True on CPU, and switch to pytorch when https://github.com/pytorch/pytorch/issues/126115 is addressed (assuming this makes pytorch faster than scipy)?
expose CPU/GPU choice (default should be GPU if there is one?)
expose batch_size (and document its use well)
split_ parameters can be exposed later, if we know there is a good user base for this.
440 adds some parameters to cellfinder image processing in Python. We've discussed on zulip how/which we'd like to expose these in the API (CLI and napari).
The plan is to
split_parameters can be exposed later, if we know there is a good user base for this.