[Feature] Run cell detection on subvolume of an image and not just select z planes

brainglobe / cellfinder

Automated 3D cell detection in very large images

https://brainglobe.info/documentation/cellfinder/index.html

BSD 3-Clause "New" or "Revised" License

181 stars 39 forks source link

[Feature] Run cell detection on subvolume of an image and not just select z planes #468

Open IgorTatarnikov opened 2 weeks ago

IgorTatarnikov commented 2 weeks ago

Is your feature request related to a problem? Please describe. Currently, cellfinder only supports restricting the search space by the start and end plane. Sometimes, it may be necessary to restrict the search space in plane as well (e.g., only run detection in (:, 100:400, 200:500) (z, y, x))