search

brainhack-school2020 / mwmaclean-BHS2020

Organizing, preprocessing, analyzing and visualizing diffusion MRI data.
Creative Commons Zero v1.0 Universal
2 stars 0 forks source link

data visualisation #2

Open simonsoubeyrand opened 4 years ago

simonsoubeyrand commented 4 years ago

Hi Michelle!

Did you already plan on the tools you'll use for visualisation of your connectivity results?

Cheers, S.

mwmaclean commented 4 years ago

Hello Simon,

Thanks for your question! I've added details in my repo for the data visualization but I haven't fully decided yet. @nooralsh would you have any recommendations for data visualization tools for both dMRI and rsfMRI given the current tools I plan on using for processing the data?

nooralsh commented 4 years ago

There's a few!

For dMRI, depending on what you want to look at and how, you can use: MI-Brain, MRview from MRtrix3, or MisterI. There are probably others but these will cover what you need and more.

For rsfMRI, I am less familiar with the tools but I know you can use nilearn to start. You can probably use the programs that also process rsfMRI like C-PAC. I also found this python-based surface integration for fMRI data called pycortex and CONN but it's in MATLAB. If any of those don't work, I just stumbled on a wiki list of fMRI tools also ?!

Good luck!