brainhackorg / global2022

Github repo for the brainhack 2022 website and event
https://brainhack.org/global2022/
MIT License
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Big Neuroimaging Dataset Phenotype BIDS Tools #156

Open JessyD opened 1 year ago

JessyD commented 1 year ago

Title

Big Neuroimaging Dataset Phenotype BIDS Tools

Leaders

Jessica Dafflon and Eric Earl

Collaborators

No response

Brainhack Global 2022 Event

Brainhack Washington DC

Project Description

Information about phenotypes (i.e., age, responses to cognitive/clinical questionnaires, blood tests) is hard to share and varies widely in format when shared. For example, some studies share this information in .tsv, .csv, and some even share this information in .pdf files. Building upon the recent guidelines for phenotypic data in BIDS, we created a repository to share the phenotypes in a uniform & machine-readable format for a few commonly used neuroimaging datasets. We have written the code to extract a dictionary.json (a file that contains a list of the phenotypes present and their description) for a few datasets, but this can be extended to other neuroimaging datasets. A list of other possible contributions is present on the github issues.

Link to project repository/sources

Goals for Brainhack Global

Good first issues

  1. issue one: Run the code for one of the provided datasets. See if there are any issues/bugs and if necessary improve their documentation
  2. To see more issues check our github issues.

Communication channels

bids-phenotype channel on brainhack DC's slack workspace

Skills

Onboarding documentation

No response

What will participants learn?

Data to use

No response

Number of collaborators

more

Credit to collaborators

All collaborators will be added to the git repository and will be on the abstract submission of this project to the OHBM conference

Image

Leave this text if you don't have an image yet.

Type

data_management

Development status

0_concept_no_content

Topic

other

Tools

BIDS

Programming language

Python

Modalities

other

Git skills

0_no_git_skills, 1_commit_push, 2_branches_PRs

Anything else?

No response

Things to do after the project is submitted and ready to review.

JessyD commented 1 year ago

Hi @brainhackorg/project-monitors my project is ready!

Remi-Gau commented 1 year ago

Your project is now on the website