Closed crnolan closed 11 months ago
Hi @brainhackorg/project-monitors my project is ready!
Adding a link to the ephys bids extension in case this can help prevent wheel reinventions.
https://docs.google.com/document/u/0/d/1oG-C8T-dWPqfVzL2W8HO3elWK8NIh2cOCPssRGv23n0/mobilebasic
I've been loosely tracking that project, might be some overlap, but the file formats etc. are all quite different.
yup I would not expect file formats to be the same but some metadata may. :-)
Title
Normalisation and artefact correction toolkit for fibre photometry data
Leaders
Chris Nolan (Mattermost: @cnolan | Mastodon: @cnolan@fediscience.org)
Collaborators
Phil Jean-Richard Dit Bressel Thomas Burton J Bertran-Gonzalez Chelsea Goulton
Brainhack Global 2022 Event
Brainhack Australasia
Project Description
Studies using optic fibres to record real-time fluorescent biosensors in-vivo are now commonplace, yet despite a large degree of overlap in the techniques used to filter and normalise this data, there is a surprising lack of open tooling around such analysis. This project is an effort to fill this gap by providing flexible Python-based implementations of common normalisation and artefact correction procedures for fluorescent biosensors, along with some basic analysis tools.
Link to project repository/sources
TBA
Goals for Brainhack Global
Good first issues
Communication channels
https://mattermost.brainhack.org/brainhack/channels/fibrepy
Skills
Primarily, some knowledge of fluorescent biosensor normalisation and analysis procedures will be useful. We'll be predominantly working in Python, but there will be tasks for all levels of Python competency.
Bonus useful skills:
Onboarding documentation
No response
What will participants learn?
Data to use
BYO fibre & behavioural data - we'll create a repository of useful examples.
Number of collaborators
more
Credit to collaborators
Project contributors will be listed on the repository README.
Image
Leave this text if you don't have an image yet.
Type
data_management, method_development, pipeline_development, visualization
Development status
1_basic structure
Topic
systems_neuroscience
Tools
BIDS
Programming language
Python
Modalities
behavioral, other
Git skills
0_no_git_skills, 1_commit_push, 2_branches_PRs
Anything else?
Modalities: fibre_photometry
Things to do after the project is submitted and ready to review.
Hi @brainhackorg/project-monitors my project is ready!