Open amaiacc opened 1 year ago
MRIQC & fMRIPrep - physiology and task visualization with carpetplot
Oscar Esteban
code@oscaresteban.es
Celine Provins
BrainHack Donostia
Data visualization, ICA, MR methodologies, PCA, Physiology
Continue improving MRIQC's and fMRIPrep's carpet plot views with more timeseries that inform about physiological recordings and the task paradigm.
https://nipreps.org
5
Good for beginners
Medium
Open neuro data
https://github.com/nipreps
Deliverable 1: Added visualization of physio recordings; Deliverable 2: Added visualization of tasks; Deliverable 3: Overhaul of the panel to better fit all the new information.
2
https://www.nipreps.org/community/
Coding methods, Data management, Documentation, Method development, Visualization
Python
Basic (commit & push)
fMRI
AFNI, ANTs, BIDS, fMRIPrep, FSL, Nipype
Project title:
MRIQC & fMRIPrep - physiology and task visualization with carpetplot
Project leader:
Oscar Esteban
Email:
code@oscaresteban.es
Collaborators:
Celine Provins
Brainhack Global 2022 Event:
BrainHack Donostia
Topic:
Data visualization, ICA, MR methodologies, PCA, Physiology
What is the purpose of the project:
Continue improving MRIQC's and fMRIPrep's carpet plot views with more timeseries that inform about physiological recordings and the task paradigm.
Where can participants find key resources to work on this project:
https://nipreps.org
What stage is the project on:
5
Required programming skills for the project:
Good for beginners
Background knowledge needed on the topic:
Medium
Data to use:
Open neuro data
Link to project repository:
https://github.com/nipreps
Goals for Brainhack Donostia 2022:
Deliverable 1: Added visualization of physio recordings; Deliverable 2: Added visualization of tasks; Deliverable 3: Overhaul of the panel to better fit all the new information.
What will participants learn:
Number of collaborators:
2
Credit to collaborators:
https://www.nipreps.org/community/
Type of project:
Coding methods, Data management, Documentation, Method development, Visualization
Programming languages:
Python
Necessary git skills level for the project:
Basic (commit & push)
Modality:
fMRI
Software suites:
AFNI, ANTs, BIDS, fMRIPrep, FSL, Nipype