Dedicated datasets for tutorials

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Brainlife.io Documentation

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Dedicated datasets for tutorials #79

Open guiomar opened 3 years ago

guiomar commented 3 years ago

Hi!

I think it would be a good idea to have a small dedicated dataset for Brainlife tutorials. It doesn't need to be big, just a subject with MRI, fMRI, DWI, etc. They could be uploaded to OpenNeuro, so they become easily accessible for all users.

francopestilli commented 3 years ago

@guiomar great idea. Do you have a suggestion for a ON dataset with these three modalities that we could dedicate fro this?

guiomar commented 3 years ago

MRI is not my big area of expertise, but for the MEG toolbox comparison we aimed some years ago we used the Wakeman & Henson (2015) multimodal face processing dataset. https://openneuro.org/datasets/ds000117/ I think it also contains MRI, dwi and bold.

It will very good if we could use it. As and additional advantage it also contains MEG and there are several publications using it with different meg toolboxes reproducible pipelines:

Brainstorm (Tadel et al. 2019) https://www.frontiersin.org/articles/10.3389/fnins.2019.00076/full
MNE-python (Jas et al. 2018) https://www.frontiersin.org/articles/10.3389/fnins.2018.00530/full
SPM12 (Henson et al. 2019) https://www.frontiersin.org/articles/10.3389/fnins.2019.00300/full

soichih commented 3 years ago

The "sample dataset" project provides data objects to be used for test / tutorials, etc.

https://brainlife.io/project/5d786647281b9525d8821011/detail

This project currently only contains anat/dwi data objects, but I think we could/should add other modalities also.

The data objects in this project is also used as "sample data" for various datatypes to be used as model data objects.

francopestilli commented 3 years ago

hi @soichih I think this project is fine, @guiomar was suggesting a proper project with a readme file that explains how to use it and what to use it for. Also with different data modalities. I think we are close.

@guiomar have you seen this page? brainlife.io/datasets it allows importing directly from OpenNeuro.org

soichih commented 3 years ago

I've made you both administrator for the sample project. Please feel free to update the desc / readme to suit your need.

On Tue, Jan 12, 2021 at 2:50 PM Franco Pestilli notifications@github.com wrote:

hi @soichih https://github.com/soichih I think this project is fine, @guiomar https://github.com/guiomar was suggesting a proper project with a readme file that explains how to use it and what to use it for. Also with different data modalities. I think we are close.

@guiomar https://github.com/guiomar have you seen this page? brainlife.io/datasets it allows importing directly from OpenNeuro.org

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