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brainstorm-tools / brainstorm3

Brainstorm software: MEG, EEG, fNIRS, ECoG, sEEG and electrophysiology
http://neuroimage.usc.edu/brainstorm
GNU General Public License v3.0
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Add atlas selection as an option for Brainsuite segmentation process #736

Closed chinmaychinara91 closed 2 months ago

chinmaychinara91 commented 2 months ago

Currently BrainSuite processing in Brainstorm just uses the USC Brain atlas by default and though the USC Lobes atlas (https://brainsuite.org/usclobesatlas/) is available in the BrainSuite installation package there is no way to use it in Brainstorm through the process_segment_brainsuite . This PR exposes this option to the users.

@rcassani let me know if there is a better way.

@tmedani @ajoshiusc FYI based on our discussion.

chinmaychinara91 commented 2 months ago

Closing this PR because USC lobes currently is not distributed as part of BrainSuite. Had a wrong understanding. Will open a new PR to handle this.

@tmedani @ajoshiusc