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break-through-cancer / btc-spatial-pipelines

Nextflow spatial pipelines (for Spatial Transcriptomics, IMC, etc.)
MIT License
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expression profile in cirro #22

Open dimalvovs opened 3 months ago

dimalvovs commented 3 months ago

We provide an option to specify the truth expression profile in the pipeline 

sample,data_directory,n_cell_types,bleeding_correction,expression_profile
"my_sample","/path/to/spaceranger/dir",5,false,"/path/to/profile.csv"

Would it work with cirro?