add option to run deconvolution with reference

break-through-cancer / btc-spatial-pipelines

Nextflow spatial pipelines (for Spatial Transcriptomics, IMC, etc.)

MIT License

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add option to run deconvolution with reference #34

Open dimalvovs opened 3 weeks ago

dimalvovs commented 3 weeks ago

the is a proposal by @atuldeshpande to add an option of using the fine mapping (reference) workflow to both, the standart nextflow version of the pipeline, and also on cirro.

questions:

how to provide the accompanying single cell dataset?