add spacemarkers - Githubissues

break-through-cancer / btc-spatial-pipelines

Nextflow spatial pipelines (for Spatial Transcriptomics, IMC, etc.)

MIT License

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Closed dimalvovs closed 3 months ago

dimalvovs commented 6 months ago

Add spacemarkers to the pipeline to be able to identify spatially interacting genes.

[x] add jhu-spatial submodule from https://github.com/FertigLab/spatial-pipeline
[x] connect spacemarkers to main pipeline
[x] test-local
[x] test-cirro

dimalvovs commented 3 months ago

test-cirro complete