as a user of this workbook, I need to be able to save the results for later processing

breaks-software / Candida-CRISPR-Target-Notebook

This Google Colab Notebook is intended to be used to speed the processing and identification of target gRNA sequences for introduction to Candida species via CRISPR techniques.

MIT License

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as a user of this workbook, I need to be able to save the results for later processing #1

Closed breaks-software closed 4 years ago

breaks-software commented 4 years ago

Since I will need to wait for the two web sites to process my multiple requests, it could take minutes to complete. I will start it off, then go do something else (of course, that's the whole point of the notebook in the first place). The problem is that if the notebook completes processing, and Google Colab stops my session while I'm away, then my results will be displayed, but a simple tweak may cause them to be lost.

I want to have the results saved somewhere automatically.

breaks-software commented 4 years ago

I'll add a final step to download the results as;

CSV with all of the columns from the EuPaGDT website results and from the RNA Fold Server include columns with the MFE and the URL to the SVG for the Centroid secondary structure
HTML with the same subset of columns that are displayed in the notebook.

The files should land up in the browser's default Downloads folder

breaks-software commented 4 years ago

resolved in commit id 66f3dc34a83f11a99de0f966b5bd91ca2ab61593