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breaks-software / Candida-CRISPR-Target-Notebook

This Google Colab Notebook is intended to be used to speed the processing and identification of target gRNA sequences for introduction to Candida species via CRISPR techniques.
MIT License
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As a user, in the "Collect the gene sequence" section I want to be able to paste a custom sequence or upload my own FASTA file instead of searching for it from the Candida Genome Database #11

Closed breaks-software closed 2 years ago

breaks-software commented 3 years ago

The "Collect the gene sequence" section was originally added to minimize the work required to populate the sequence form field in the EuPaGDT search page. After using this notebook for some time, user now wants to be able to add his own sequence, instead of one from the Candida Genome Database, as part of his design work.

At a minimum, user should be able to paste in a raw DNA sequence. a plus would be to upload their own FASTA file from local storage.

breaks-software commented 2 years ago

Resolved in 1de12f2 Ideally, the Jupyter notebook would allow conditional display of fields, but I could not find a way to do that.