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breister2 / Clostridium_scindens_mining

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Run GTDB-Tk on 31 Reference Clostridium scindens genomes from NCBI #9

Open breister2 opened 1 year ago

breister2 commented 1 year ago

GTDB-Tk was run using the following shell script: /storage1/data19/Gut_Microbiome_Clostridium_scindens/run_gtdbtk_c_scindens_reference.sh

The command run using this shell script is: gtdbtk classify_wf -x fna --cpus 20 --pplacer_cpus 20 --tmpdir gtdbtk_temp_files/ --out_dir GTDBTK_Output_Files_Clostridium_scindens_Reference/ --genome_dir Clostridium_scindens_NCBI_reference_genomes/