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brentp / bwa-meth

fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome
https://arxiv.org/abs/1401.1129
MIT License
139 stars 53 forks source link

implement Yaping's suggestions for WGBS Bis-SNP #13

Closed ttriche closed 10 years ago

ttriche commented 10 years ago

"Btw. Don't use --non-directional-protocol option. If it is not rrbs, I will recommend to use -minConv 1.

Yaping

Sent from my iPhone"

brentp commented 10 years ago

can't argue with that. cheers.