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brentp / bwa-meth

fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome
https://arxiv.org/abs/1401.1129
MIT License
139 stars 53 forks source link

fix unmapped read reporting #29

Closed jklughammer closed 7 years ago

jklughammer commented 7 years ago

also report unmapped reads in their unconverted form