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brentp / bwa-meth

fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome
https://arxiv.org/abs/1401.1129
MIT License
139 stars 53 forks source link

Added functionality to pass through unkown command line arguments to … #31

Closed swingingsimian closed 7 years ago

swingingsimian commented 7 years ago

…bwa_mem extra_args.

Does what it says on the tin really. The support for extra_args was already there in the bwa_mem function, so I just caught the unknown args and passed them through as a string.

brentp commented 7 years ago

nice and simple. cheers.