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brentp / bwa-meth

fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome
https://arxiv.org/abs/1401.1129
MIT License
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Function to remove non-converted non-CpG reads #37

Closed Shicheng-Guo closed 1 year ago

Shicheng-Guo commented 7 years ago

maybe a function to remove the reads for which the bisuflite conversion is failed (multiple methylated CHH)

brentp commented 7 years ago

Seems like it could be good to do something with those. I'll accept PR's to that effect.