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brentp / bwa-meth

fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome
https://arxiv.org/abs/1401.1129
MIT License
144 stars 54 forks source link

Only split "SN" from the rest of the contig name #80

Closed jdidion closed 2 years ago

jdidion commented 2 years ago

This will leave subsequent ':' in tact, thus avoiding mangling of alt contig names.

jdidion commented 2 years ago

@brentp I'd greatly appreciate if this could be merged and a new version released. Thanks!

brentp commented 2 years ago

this is now in v0.2.5

jdidion commented 2 years ago

Thanks!