brentp combat.py issues - Githubissues

brentp / combat.py

python / numpy / pandas / patsy version of ComBat for removing batch effects.

MIT License

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issues

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Can I use combat on circadian RNA-seq timeseries

#13 alex297 opened 4 years ago
0
Fixed all NANs when genes with all zeros. #11

#12 zqfang opened 5 years ago
2
Getting all NaN if some rows have zero expression

#11 wdecoster opened 6 years ago
0
Only categorial variables

#10 danielanach opened 6 years ago
0
Remove deprecated `.ix`

#9 mgalardini closed 7 years ago
0
Handle new pandas versions, fix travis CI

#8 mgalardini closed 7 years ago
1
Several bugfixes for newer pandas versions

#7 mgalardini closed 7 years ago
4
Examples with many covariates

#6 olgabot opened 9 years ago
0
Running with a model matrix

#5 olgabot closed 9 years ago
0
Fix bug, add docstrings, make variables more readable

#4 olgabot closed 9 years ago
15
License

#3 olgabot closed 9 years ago
1
Run with 47K rows, 566 columns and 48 batches takes 5+ hour and it's still running

#2 fbrundu opened 11 years ago
2
How to call combat.py with no covariates

#1 fbrundu opened 11 years ago
4