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brentp
/
combat.py
python / numpy / pandas / patsy version of ComBat for removing batch effects.
MIT License
100
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Can I use combat on circadian RNA-seq timeseries
#13
alex297
opened
4 years ago
0
Fixed all NANs when genes with all zeros. #11
#12
zqfang
opened
5 years ago
2
Getting all NaN if some rows have zero expression
#11
wdecoster
opened
6 years ago
0
Only categorial variables
#10
danielanach
opened
6 years ago
0
Remove deprecated `.ix`
#9
mgalardini
closed
7 years ago
0
Handle new pandas versions, fix travis CI
#8
mgalardini
closed
7 years ago
1
Several bugfixes for newer pandas versions
#7
mgalardini
closed
7 years ago
4
Examples with many covariates
#6
olgabot
opened
9 years ago
0
Running with a model matrix
#5
olgabot
closed
9 years ago
0
Fix bug, add docstrings, make variables more readable
#4
olgabot
closed
9 years ago
15
License
#3
olgabot
closed
9 years ago
1
Run with 47K rows, 566 columns and 48 batches takes 5+ hour and it's still running
#2
fbrundu
opened
11 years ago
2
How to call combat.py with no covariates
#1
fbrundu
opened
11 years ago
4