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brentp / duphold

don't get DUP'ed or DEL'ed by your putative SVs.
MIT License
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IndexError with Svaba caller vcf #36

Closed AhmedArslan closed 4 years ago

AhmedArslan commented 4 years ago

weird variant:Variant(10:167066314 N/[10:167066555[N) fatal.nim(39) sysFatal Error: unhandled exception: index 167065294 not in 0 .. 130694993 [IndexError]

any suggestions to get rid of the above-mentioned error?

brentp commented 4 years ago

Chromosome 10 is 130694993 bases long and that variant is way past that. I should handle and report this error better in duphold, but this seems like a bigger problem upstream with svaba.

brentp commented 4 years ago

I am going to close this as not a duphold issue. Please re-open if you find otherwise.