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brentp / geneimpacts

prioritize effects of variant annotations from VEP, SnpEff, et al.
MIT License
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Please bump version 0.3.7! #17

Closed naumenko-sa closed 5 years ago

naumenko-sa commented 5 years ago

Hi @brentp !

Could you please create a new release of geneimpacts? Otherwise the change https://github.com/brentp/geneimpacts/pull/16 is not propagated to bioconda/bcbio and ensembl_gene_id is empty in gemini.db after bcbio upgrade.

Thanks! Sergey

brentp commented 5 years ago

how is this related to #16 ?

naumenko-sa commented 5 years ago

The last release of geneimpacts was in June 2018 https://github.com/brentp/geneimpacts/releases/tag/v0.3.6

16 was added in September 2018 after the v.0.3.6 release

bcbio_1.1.5 installs geneimpacts 0.3.6 without that change and the bug is still there in the fresh installation: https://github.com/quinlan-lab/vcf2db/issues/48

SN

brentp commented 5 years ago

done. thank you.