Support for new effect types in snpEff 4.3 - Githubissues

brentp / geneimpacts

prioritize effects of variant annotations from VEP, SnpEff, et al.

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Support for new effect types in snpEff 4.3 #8

Closed chapmanb closed 7 years ago

chapmanb commented 7 years ago

snpEff 4.3 is due out soon and has a lot of improvements for structural variation annotation we're using in bcbio. This adds support for a few new effect types present in 4.3

inframe_insersion/deletion -- now prefixed with conservative

https://github.com/pcingola/SnpEff/commit/7727dd92a91345559fa873cc95e8bb18df835e84#diff-0315e7e23ec67c4ac01e90587e215319R353
structural_interaction_variant

https://github.com/pcingola/SnpEff/commit/18ad192f751d2e34595949dda8b25c295c8a9ca1#diff-0315e7e23ec67c4ac01e90587e215319R456
feature_fusion

https://github.com/pcingola/SnpEff/commit/facf8c58fc07a167706b90f6a263d037faa58862#diff-0315e7e23ec67c4ac01e90587e215319R396

brentp commented 7 years ago

thanks!