indexcov support for csi indexes

brentp / goleft

goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary

MIT License

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indexcov support for csi indexes #55

Open mcshane opened 5 years ago

mcshane commented 5 years ago

Hi @brentp. Any chance to add support for CSI indexes for indexcov? Generating lots of assemblies, and many have larger scaffolds, which require the CSI rather than BAI...

brentp commented 5 years ago

Looks like that should be do-able. It will be a couple of weeks before I can get to it.

It will have to convert anything that's not already 16KB bins to that resolution but the biogo/hts API is similar for BAI and CSI, so it might not take much.

mcshane commented 5 years ago

Cool. Thanks!