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brentp / goleft

goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary
MIT License
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error on depth, seems to make temp file it can't find #66

Open bioinfowheat opened 4 years ago

bioinfowheat commented 4 years ago

goleft_linux64 depth --maxmeandepth 100 --mincov 0 --q 20 --stats --reference $reference --processes 20 --bed Agrotis_ipsilon.GCA_004193855.1_ASM419385v1_genomic.CDS.bed --prefix $prefix $bam

2020/09/30 19:03:32 open P14913_125_S47_L003.q20.CDS.PNFC01000001.1-121292-121422.tmp.callable.bed: no such file or directory

make these before crashing: 38 Sep 30 19:03 P14913_125_S47_L003.q20.CDS.PNFC01000001.1-104559-104602.tmp.callable.bed 48 Sep 30 19:03 P14913_125_S47_L003.q20.CDS.PNFC01000001.1-104559-104602.tmp.depth.bed 0 Sep 30 19:03 P14913_125_S47_L003.q20.CDS.PNFC01000001.1-71751-73003.tmp.callable.bed 0 Sep 30 19:03 P14913_125_S47_L003.q20.CDS.PNFC01000001.1-71751-73003.tmp.depth.bed