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brentp / indelope

find large indels (in the blind spot between GATK/freebayes and SV callers)
MIT License
39 stars 1 forks source link

Binary for libc-2.12.so #3

Open monkollek opened 7 years ago

monkollek commented 7 years ago

Hi Brent,

I have same issue as https://github.com/brentp/indelope/issues/1

This is a bump to release a binary that will work with libc-2.12.so as would like to give it a go over the next few days on exomes at the Broad Institute.

I know you commented that you would like to get get issues relating to using the tool itself BUT you need to a provide binary that actually works first for people 😩

Thanks!

monkollek commented 7 years ago

I'm happy to share the binary but the output to stdout besides the header does not appear to be in VCF format and more like debug text output. Did I accidentally compile with the wrong options or is this expected as it's still in development?

brentp commented 7 years ago

you'll have to compile with nim c -d:release src/indelope.nim without the -d:release it will output debugging info.