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brentp / slivar

genetic variant expressions, annotation, and filtering for great good.
MIT License
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Inquiry for vcf file #172

Closed dbswls0322 closed 1 month ago

dbswls0322 commented 1 month ago

Dear slivar developer,

I'm deeply grateful your effort to develop and maintain this tool,

I got one error during running slivar expr with slivar v0.3.1

image

And this is my code

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I wondered whether I can only upload 1 merged vcf file or a number of vcf files. If it's only acceptable to upload 1 vcf file, then should I merge it using GLnexus no matter phenotype of sample (ex. normal, tumor)?

Best Regards.

brentp commented 1 month ago

you can only send a single VCF to slivar. the && is interpreted by the shell as a 2nd command.