search

brentp / slivar

genetic variant expressions, annotation, and filtering for great good.
MIT License
249 stars 23 forks source link

Add "AC_male" (v2 and v3) and "controls_AC_male" (v2) to gnomAD gnotate files for chrX #64

Closed seboyden closed 3 years ago

seboyden commented 4 years ago

Enable filtering on male hemizygote count in gnomAD for X-linked variants

JohannKaspar commented 3 years ago

This would be very helpful indeed!

seboyden commented 3 years ago

I ran make-gnotate myself on the chrX VCFs for gnomad v2 and v3 to do this. Future releases of pre-made gnotate files will be on newer versions of gnomad anyway.