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brentp / slivar

genetic variant expressions, annotation, and filtering for great good.
MIT License
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AD: int32 required to use this tool #83

Closed sprakashUTH closed 3 years ago

sprakashUTH commented 3 years ago

I receive this error when I use slivar: "AD: int32 required to use this tool." What should I do to fix?

brentp commented 3 years ago

you should be able to use without that field and just get a warning. Are you talking about duodel? AD is a field that indicates the number of reference and alternate reads for each sample at each site and is required for duodel. You may be able to create it from other fields if the VCF lists reference and alt reads in some other way.