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brentp / smoove

structural variant calling and genotyping with existing tools, but, smoothly.
Apache License 2.0
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lumpy_filter: command not found #145

Open fengpku opened 3 years ago

fengpku commented 3 years ago

Hi I installed smoove by conda on linux, but when running it, there are some errors

[smoove]: ([E]lumpy-filter) 2021/03/08 15:28:07 /bin/bash: lumpy_filter: command not found

Do you know how to fix it?

brentp commented 3 years ago

hi, if you run smoove with no arguments, you should see a list of tools and an indication of whether they are found on your path. All of those will need to be present to run smoove. If you do not have lumpy_filter then lumpy has not been installed correctly.