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brentp / smoove

structural variant calling and genotyping with existing tools, but, smoothly.
Apache License 2.0
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Smoove missed small duplications #167

Open y1025i opened 2 years ago

y1025i commented 2 years ago

Hi, I am calling CNVs at sequence depth of ~10X. There are almost no small duplications (~100bp) in callset . But I could find small deletions. Is it normal? I do not know whether there are some errors in my pipeline.

Thanks!